Submitted organism: Staphylococcus aureus (taxid = 1280, rank = species, lineage = Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus) The genome is contaminated with sequences from an organismĮ.g. The organism cannot be identified (due to lack of a close The submitted genus does not match the genus of the
The organism has been found to be misassigned to the genome. Matches the genus of the ANI-predicted organism. To the genome, has been confirmed by ANI. The organism name associated with the input reads, and assigned
#WHAT IS THE DEFINITION OF RAPT VERIFICATION#
The possible statuses of the verification are: You received by email, or by clicking the You can share your results by forwarding to others the URL for the job results Results will be deleted after 6 weeks from the time the job was run. You can check the status of all your RAPT jobs byĭownload RAPT results using the link sent by email or click on the Download Monitor your email for confirmation that the job has started.Īnother email will inform you when the job is complete. The "Choose R1 File" and "Choose R2 File" buttons. Upload the sequencing reads using the "Choose file" button.Ĭlick “Two files” to provide reads from a paired-end library in Reads of a pair adjacent to each other in the file This file can contain single-end reads or paired-end reads with You can optionallyĮnter a strain name in the “Strain” field.Ĭlick “One file” if all reads for the run are in a single file.
Gzipped files areĮnter the organism name (genus only or genus species known to Use the box “Run RAPT with unassembled FASTQ file(s)” if Provide Illumina sequencing reads as an SRA run or as FASTQĮnter the SRA accession in the box named "Run RAPT with a SRA
#WHAT IS THE DEFINITION OF RAPT HOW TO#
In this section we will describe how to start a RAPT job and download the results.
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